ramach.exe
Make a non-graphical Ramachandran plot from pdb files.
2015.2.18

execute: ramach.exe.zip (Windows) / ramach.zip (OSX10.7)

input eg: 2C77.pdb

output eg: 2C77.pdb.RMCH.txt

*Download files from right-click menu.


USAGE

Place the execute and pdb files in the same folder, and duble-click the exwcute. MS-DOS window comes up, and input the parameters.

*Red letters are input from the consol.


         ++++++++++++++++++++++++++++++++++
          R A M A C H A N D R A N  P L O T
             O N  L I N E  P R I N T E R
         ++++++++++++++++++++++++++++++++++
               g77 version 18-JAN-2002


 > Input PDB file: 2C77.pdb
 > Chain id (number) to plot? [CR=all]: return
 > Residue number to plot? start & end [CR=all]: return

		Read  3635 atoms
		       792 residues

		 Use   421 residues

 > Output to file? [*Yes/No]: return     ← No means just plotting on your monitor.

 >> Outout file is 2C77.pdb.RMCH.txt    ← extension added to input file name.

 > Any title/comment: return
 > Do you need table of phi-psi? [Yes or No*]: return

 >> Plotting simbol? [1.one letter AA code* or 2.other single simbol]: return
 >> Remove glycine residue? [Yes* or No]: return
 >> How many columns for horizontal axis?
     [CR=124 for 16H x 8V pitch]: return
 >> How many rows for vertical?
     [CR=auto ratio depending on horizontal pitch]: return



OUTPUT
2C77.pdb.RMCH.txt

 N O N - G R A P H I C A L   R A M A C H A N D R A N   P L O T     v.18-JAN-2002
 > Outout file is 2C77.pdb.RMCH.txt
 > Use mono-space font to print


  psi                                                                                          
  180+------------------------------+------------------------------+------------------------------+-------------------------------+
     |       F    V    MV  F                        +              .                                                              |
     |       FYF   F              N S               +              .                                                              |
     |         E2K2   II       R K    Q2L           +              .                                                              |
     |    M  FAE     VR TR T          K   P   2     +              .                                                              |
     |          3 22DL  3  M T    C2D   LP T 2 P    +              .                                                              |
     |          I  3  R V V2  3  N      2 4LA V     +              .                                                              |
     |            2  V  E  3   V Q HTTEP D  D P R   +              .                                                              |
     |      2     2V 2 VKV   3   3V    M T2   26 3  +              .                                                              |
     |              V  3  V3FAK2  2   4V   2 I   2RA+              .                                                              |
     |       K LM     KV HI  T R 3NV  T  2  S      T+              .                                                              |
     |                   FA   V V  DVL      A V   K +              .                                                              |
     |              M2N Q  F NIYII TI M             +              .                                                              |
     |                  V D                         +              .                                                              |
     |              D                               +              .                  ++                                          |
     +                 T            D              +               .                +  +                                          +
     |          N              V               +                   .               +   +                                          |
     |                                    +                        .              +    +                                          |
     |                               D +                           .              +    +                                          |
     |                  R              +P                          .              +    +                                          |
     |                                 +                           .              +    +                                          |
     |                                 +                           .              +    +                                          |
     |                                 +                           .              +    +                                          |
     |                                 +                           .              +   H+                                          |
     |                                 +                           .              +    +                                          |
     |+                                +                           .              +    K                                          |
     |    +               YY           +                           .              +    +                                          |
     |       +                         +                           .              ++++++                                          |
     |         ++++++++++D++++++++++++++                           .                      E                                       |
     |                     T   E                                   .                      DR                                      |
    0+...........................M.T..............................................................................................+
     |                         E   K  E D                          .                                                              |
     |                           R2 V D2A   E                      .                                                              |
     |                              D   2 H32A PP                  .                                                              |
     |                     T E +++++3S+++P++AQ++++++++             .                                                              |
     |                T      + E          22A2PA     +             .                                                              |
     |                  D  +  L     Y2  Q  242VNP    +             .                                                              |
     |+                  +    E  K E      T38745     +             .                                                              |
     |   +             R                 W 45665L2 P +             .                    L                                         |
     |      ++++++++++                      YLA  Y   +             .                                                              |
     |                    I          I               +             .                                                              |
     |                                               +             .                                                              |
     |                                               +             .                                                              |
     |                                               +             .                                                              |
     |++++++++++++++++++++++++++++++++++++++++++++++++             .                                                              |
     +                                                             .                                                              +
     |                                                             .                                                              |
     |                                                             .                                                              |
     |                                                             .                                                              |
     |                                                             .                                                              |
     |                                                             .                                                              |
     |                                                             .                R                                             |
     |                                                             .                                                              |
     |                                                             .                                                              |
     |                                                             .                                                              |
     |                                                             .                                                              |
     |                                                             .                                                              |
     |                                                             .                                                              |
     |                                                             .                                                              |
     |+++++++T+++++++++++++++++++++++++++++++++++++++              .                                                              |
     |                V      T        P             +              .                                                              |
 -180+------------------------------+------------------------------+------------------------------+-------------------------------+
   -180                                                            0                                                             180
                                                                                                                                 phi

    *Number of residues is indicated by 2-9, and residues more than 10 are represented by *.
    *Resolution: horizontal =  2.903 degree   vertical =  6.000 degree ( 124 x  60 columns)
    *Total  792 residues are read from input
    *All chains are plotted
    *All  421 AA-residues are plotted

   ...