| ramach.exe |
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Make a non-graphical Ramachandran plot from pdb files.
2015.2.18
execute: ramach.exe.zip (Windows) /
ramach.zip (OSX10.7) input eg: 2C77.pdb output eg: 2C77.pdb.RMCH.txt
*Download files from the right-click menu. Place the execute and pdb files in the same folder, and duble-click the exwcute. MS-DOS window comes up, and input the parameters. *Red letters are input from the consol.
++++++++++++++++++++++++++++++++++
R A M A C H A N D R A N P L O T
O N L I N E P R I N T E R
++++++++++++++++++++++++++++++++++
g77 version 18-JAN-2002
> Input PDB file: 2C77.pdb
> Chain id (number) to plot? [CR=all]: return
> Residue number to plot? start & end [CR=all]: return
Read 3635 atoms
792 residues
Use 421 residues
> Output to file? [*Yes/No]: return ← No means just plotting on your monitor.
>> Outout file is 2C77.pdb.RMCH.txt ← extension added to input file name.
> Any title/comment: return
> Do you need table of phi-psi? [Yes or No*]: return
>> Plotting simbol? [1.one letter AA code* or 2.other single simbol]: return
>> Remove glycine residue? [Yes* or No]: return
>> How many columns for horizontal axis?
[CR=124 for 16H x 8V pitch]: return
>> How many rows for vertical?
[CR=auto ratio depending on horizontal pitch]: return
OUTPUT 2C77.pdb.RMCH.txt
N O N - G R A P H I C A L R A M A C H A N D R A N P L O T v.18-JAN-2002
> Outout file is 2C77.pdb.RMCH.txt
> Use mono-space font to print
psi
180+------------------------------+------------------------------+------------------------------+-------------------------------+
| F V MV F + . |
| FYF F N S + . |
| E2K2 II R K Q2L + . |
| M FAE VR TR T K P 2 + . |
| 3 22DL 3 M T C2D LP T 2 P + . |
| I 3 R V V2 3 N 2 4LA V + . |
| 2 V E 3 V Q HTTEP D D P R + . |
| 2 2V 2 VKV 3 3V M T2 26 3 + . |
| V 3 V3FAK2 2 4V 2 I 2RA+ . |
| K LM KV HI T R 3NV T 2 S T+ . |
| FA V V DVL A V K + . |
| M2N Q F NIYII TI M + . |
| V D + . |
| D + . ++ |
+ T D + . + + +
| N V + . + + |
| + . + + |
| D + . + + |
| R +P . + + |
| + . + + |
| + . + + |
| + . + + |
| + . + H+ |
| + . + + |
|+ + . + K |
| + YY + . + + |
| + + . ++++++ |
| ++++++++++D++++++++++++++ . E |
| T E . DR |
0+...........................M.T..............................................................................................+
| E K E D . |
| R2 V D2A E . |
| D 2 H32A PP . |
| T E +++++3S+++P++AQ++++++++ . |
| T + E 22A2PA + . |
| D + L Y2 Q 242VNP + . |
|+ + E K E T38745 + . |
| + R W 45665L2 P + . L |
| ++++++++++ YLA Y + . |
| I I + . |
| + . |
| + . |
| + . |
|++++++++++++++++++++++++++++++++++++++++++++++++ . |
+ . +
| . |
| . |
| . |
| . |
| . |
| . R |
| . |
| . |
| . |
| . |
| . |
| . |
| . |
|+++++++T+++++++++++++++++++++++++++++++++++++++ . |
| V T P + . |
-180+------------------------------+------------------------------+------------------------------+-------------------------------+
-180 0 180
phi
*Number of residues is indicated by 2-9, and residues more than 10 are represented by *.
*Resolution: horizontal = 2.903 degree vertical = 6.000 degree ( 124 x 60 columns)
*Total 792 residues are read from input
*All chains are plotted
*All 421 AA-residues are plotted
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